Readability and automation With Snakemake, data analysis workflows are defined via an easy to read, adaptable, yet powerful specification language on top of Python. Steps are defined by "rules", which …

Snakemake workflow catalog About The Snakemake Workflow Catalog aims to provide a regularly updated list of high-quality workflows that can be easily reused and adapted for various data analysis …

Snakemake What is Snakemake? The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python …

Snakemake executor plugin: slurm SLURM is a widely used batch system for performance compute clusters. This executor plugin allows to use it in a seamless and straightforward way. Installation …

The catalog Here you can find the most important information about the Snakemake workflow catalog. Purpose This repository serves as a centralized collection of workflows designed to facilitate …

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IMS-Bio2Core-Facility/GTExSnake IMS-Bio2Core-Facility/polya_liftover IMS-Bio2Core-Facility/single_snake_sequencing MPUSP/snakemake-assembly-postprocessing …

Dec 18, 2025 · :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and pred…

Using workflows Basic usage To get started with a workflow from the catalog: Clone the repository or download the specific workflow directory.

Snakemake plugin catalog This catalog collects information about and documentation of all Snakemake plugins published on PyPI. Note that plugin support is available in Snakemake 8.0 and later. Via …